PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889252.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 486aa    MW: 54406.1 Da    PI: 5.1631
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-351462372102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d+e++ ++sw++  +sf+v+d++ef+k++LpkyFkh nf+SF+RQLn+YgFkkv+ ++         weF+++ F++gkk+ll++
  XP_015889252.1 146 FLNKTFQMVDDRETDPIVSWNQGRDSFIVWDSHEFSKHLLPKYFKHCNFSSFIRQLNTYGFKKVDPDR---------WEFANEGFRRGKKHLLKN 231
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_015889252.1 232 IKRRSR 237
                     ***985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-38142235IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-58142235IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-34142235IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.1E-17146169IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-31146235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-17184196IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340185209IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-17197209IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAAVRDASGF AGGSGGGDGG ACCSPLSPIQ LPEPIKEMEK ARKKENERPK EVVVSVEEEK  60
EEEKMVVKLN CGDGVGSSSS SSPTEEKAAE EAVVQIKEET VELVDDHVDR LGEPDVGSGS  120
GSCSSSSSLV LPKPIEGLHE VGPPPFLNKT FQMVDDRETD PIVSWNQGRD SFIVWDSHEF  180
SKHLLPKYFK HCNFSSFIRQ LNTYGFKKVD PDRWEFANEG FRRGKKHLLK NIKRRSRYSK  240
QQGGAIACVD SGKDGLESEV ETLNQDHNTL KIEILKLKQL QEDSHSQISA VEERIRCAEC  300
KQHQMFLFLI KTAKNPTFIH QLIQKRIQKK ELDGVEISKR RRLLSNPYPE SLAEGIETTQ  360
SVSNKKKFHE EKLPKQSVGT QNFAEPIFTN PTETVFSVLM DNESCSCIQD QKAKEMRGTG  420
NGPDMSSVYN VMSENLLGDY SIFDEESAVN DSVFYHELED LIAKPRDWGG YFGSLVEQTD  480
CVWSTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-2214423527129Heat shock factor protein 1
5d5v_B8e-2214423527129Heat shock factor protein 1
5d5v_D8e-2214423527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228234LKNIKRR
2338342KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889252.10.0PREDICTED: heat shock factor protein HSF30-like
RefseqXP_015889253.10.0PREDICTED: heat shock factor protein HSF30-like
TrEMBLW9QJR81e-171W9QJR8_9R
STRINGPOPTR_0006s15050.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-84heat shock transcription factor A2